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v1g111922 protein (Nematostella vectensis) - STRING interaction network
"v1g111922" - Histone deacetylase in Nematostella vectensis
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
v1g111922Histone deacetylase ; Belongs to the histone deacetylase family. HD Type 1 subfamily (431 aa)    
Predicted Functional Partners:
v1g104010
Predicted protein (1161 aa)
     
 
  0.928
v1g165676
Predicted protein (413 aa)
     
 
  0.918
v1g177252
Predicted protein (307 aa)
     
 
  0.917
v1g186024
Predicted protein (497 aa)
     
 
  0.903
v1g96946
Predicted protein (755 aa)
     
 
  0.887
v1g241179
Predicted protein (1071 aa)
     
 
  0.882
v1g232401
Inhibitor of growth protein (261 aa)
     
 
  0.864
v1g226879
Predicted protein (1022 aa)
     
 
  0.852
v1g136467
Predicted protein (306 aa)
     
 
  0.829
v1g28133
Predicted protein (128 aa)
       
 
  0.812
Your Current Organism:
Nematostella vectensis
NCBI taxonomy Id: 45351
Other names: N. vectensis, Nematostella vectensis, starlet sea anemone
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