Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Igni_0062 | Igni_1251 | Igni_0062 | Igni_1251 | TIGRFAM: DNA polymerase Pol2; PFAM: DNA polymerase B, exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B. | PFAM: ATP dependent DNA ligase. | 0.453 |
Igni_0092 | Igni_1251 | Igni_0092 | Igni_1251 | DNA-binding protein containing PIN domain-like protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | PFAM: ATP dependent DNA ligase. | 0.830 |
Igni_0240 | Igni_1251 | Igni_0240 | Igni_1251 | PFAM: Protein of unknown function DUF54. | PFAM: ATP dependent DNA ligase. | 0.404 |
Igni_0358 | Igni_1251 | Igni_0358 | Igni_1251 | PFAM: protein of unknown function UPF0153. | PFAM: ATP dependent DNA ligase. | 0.414 |
Igni_1250 | Igni_1251 | Igni_1250 | Igni_1251 | Hypothetical protein. | PFAM: ATP dependent DNA ligase. | 0.551 |
Igni_1251 | Igni_0062 | Igni_1251 | Igni_0062 | PFAM: ATP dependent DNA ligase. | TIGRFAM: DNA polymerase Pol2; PFAM: DNA polymerase B, exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B. | 0.453 |
Igni_1251 | Igni_0092 | Igni_1251 | Igni_0092 | PFAM: ATP dependent DNA ligase. | DNA-binding protein containing PIN domain-like protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family. | 0.830 |
Igni_1251 | Igni_0240 | Igni_1251 | Igni_0240 | PFAM: ATP dependent DNA ligase. | PFAM: Protein of unknown function DUF54. | 0.404 |
Igni_1251 | Igni_0358 | Igni_1251 | Igni_0358 | PFAM: ATP dependent DNA ligase. | PFAM: protein of unknown function UPF0153. | 0.414 |
Igni_1251 | Igni_1250 | Igni_1251 | Igni_1250 | PFAM: ATP dependent DNA ligase. | Hypothetical protein. | 0.551 |
Igni_1251 | Igni_1253 | Igni_1251 | Igni_1253 | PFAM: ATP dependent DNA ligase. | PFAM: TatD-related deoxyribonuclease. | 0.692 |
Igni_1251 | Igni_1254 | Igni_1251 | Igni_1254 | PFAM: ATP dependent DNA ligase. | PFAM: beta-lactamase domain protein; Belongs to the UPF0173 family. | 0.459 |
Igni_1251 | Igni_1319 | Igni_1251 | Igni_1319 | PFAM: ATP dependent DNA ligase. | PFAM: CBS domain containing protein. | 0.575 |
Igni_1251 | purL | Igni_1251 | Igni_1252 | PFAM: ATP dependent DNA ligase. | Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist [...] | 0.459 |
Igni_1253 | Igni_1251 | Igni_1253 | Igni_1251 | PFAM: TatD-related deoxyribonuclease. | PFAM: ATP dependent DNA ligase. | 0.692 |
Igni_1253 | Igni_1254 | Igni_1253 | Igni_1254 | PFAM: TatD-related deoxyribonuclease. | PFAM: beta-lactamase domain protein; Belongs to the UPF0173 family. | 0.854 |
Igni_1253 | Igni_1319 | Igni_1253 | Igni_1319 | PFAM: TatD-related deoxyribonuclease. | PFAM: CBS domain containing protein. | 0.429 |
Igni_1253 | purL | Igni_1253 | Igni_1252 | PFAM: TatD-related deoxyribonuclease. | Phosphoribosylformylglycinamidine synthase II; Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP- dependent manner. PurS interacts with PurQ and PurL and is thought to assist [...] | 0.800 |
Igni_1254 | Igni_1251 | Igni_1254 | Igni_1251 | PFAM: beta-lactamase domain protein; Belongs to the UPF0173 family. | PFAM: ATP dependent DNA ligase. | 0.459 |
Igni_1254 | Igni_1253 | Igni_1254 | Igni_1253 | PFAM: beta-lactamase domain protein; Belongs to the UPF0173 family. | PFAM: TatD-related deoxyribonuclease. | 0.854 |
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