STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK16074.1Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01383. (816 aa)    
Predicted Functional Partners:
CEK15242.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_01103.
 
   0.820
CEK19804.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02644.
 
   0.797
CEK13943.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_00672.
 
 
 0.785
CEK19801.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_02643.
  
   0.779
CEK12947.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00282.
  
   0.778
CEK16070.1
Hypothetical protein; JGI identifier:CP488_01382.
       0.762
CEK13318.1
PFAM: TPR repeat; JGI identifier:CP488_00459.
 
     0.661
CEK19798.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_02642.
 
 
 0.637
CEK16218.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_01432.
 
 
 0.600
CEK17834.1
HEAT repeat-containing protein; PFAM: HEAT repeats; JGI identifier:CP488_01981.
 
 
   0.587
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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