STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK18345.1PFAM: Competence protein; Domain of unknown function (DUF4131); TIGRFAM: ComEC/Rec2-related protein; JGI identifier:CP488_02152. (526 aa)    
Predicted Functional Partners:
CEK18342.1
Predicted hydrolase (metallo-beta-lactamase superfamily); PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; JGI identifier:CP488_02151.
     0.984
CEK16888.1
Predicted amidophosphoribosyltransferase; PFAM: Phosphoribosyl transferase domain; TIGRFAM: comF family protein; JGI identifier:CP488_01665.
 
  
 0.913
CEK16086.1
PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; JGI identifier:CP488_01387.
 
  
 0.817
CEK18348.1
Predicted RNA-binding protein containing Zn ribbon; PFAM: Protein of unknown function (DUF721); JGI identifier:CP488_02153.
 
     0.815
CEK19786.1
Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; Subunit ChlI of Mg-chelatase; TIGRFAM: Mg chelatase-related protein; JGI identifier:CP488_02638.
 
  
 0.807
CEK20601.1
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family; JGI identifier:CP488_02909.
  
  
 0.759
CEK12590.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00103.
  
  
 0.669
CEK14203.1
Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake; JGI identifier:CP488_00761.
  
  
 0.666
CEK14842.1
PFAM: Type II secretion system (T2SS), protein F; TIGRFAM: type II secretion system protein F; JGI identifier:CP488_00967.
   
  
 0.661
CEK15747.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_01271.
   
  
 0.661
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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