A0A368SA46 protein (Setaria italica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A368SA46

Uncharacterized protein. (379 aa)

Predicted Functional Partners:

K3YLL1_SETIT

0.508

K4A8C0_SETIT

0.506

K3YH33_SETIT

0.505

A0A368SQ23

0.504

K3ZSC7_SETIT

0.502

K4A8H2_SETIT

0.492

K4A899_SETIT

0.489

A0A368RR28

0.483

K3Y6J5_SETIT

0.481

A0A368PY68

0.475

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PY68	A0A368RR28	A0A368PY68	A0A368RR28	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.439
A0A368PY68	A0A368SA46	A0A368PY68	A0A368SA46	Flavin-containing monooxygenase.	Uncharacterized protein.	0.475
A0A368PY68	K3Y6J5_SETIT	A0A368PY68	K3Y6J5	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.436
A0A368PY68	K3YH33_SETIT	A0A368PY68	K3YH33	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.474
A0A368PY68	K3YLL1_SETIT	A0A368PY68	K3YLL1	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.476
A0A368PY68	K3ZSC7_SETIT	A0A368PY68	K3ZSC7	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.477
A0A368PY68	K4A8H2_SETIT	A0A368PY68	K4A8H2	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.449
A0A368RR28	A0A368PY68	A0A368RR28	A0A368PY68	Flavin-containing monooxygenase.	Flavin-containing monooxygenase.	0.439
A0A368RR28	A0A368SA46	A0A368RR28	A0A368SA46	Flavin-containing monooxygenase.	Uncharacterized protein.	0.483
A0A368SA46	A0A368PY68	A0A368SA46	A0A368PY68	Uncharacterized protein.	Flavin-containing monooxygenase.	0.475
A0A368SA46	A0A368RR28	A0A368SA46	A0A368RR28	Uncharacterized protein.	Flavin-containing monooxygenase.	0.483
A0A368SA46	A0A368SQ23	A0A368SA46	A0A368SQ23	Uncharacterized protein.	Flavin-containing monooxygenase.	0.504
A0A368SA46	K3Y6J5_SETIT	A0A368SA46	K3Y6J5	Uncharacterized protein.	Flavin-containing monooxygenase.	0.481
A0A368SA46	K3YH33_SETIT	A0A368SA46	K3YH33	Uncharacterized protein.	Flavin-containing monooxygenase.	0.505
A0A368SA46	K3YLL1_SETIT	A0A368SA46	K3YLL1	Uncharacterized protein.	Flavin-containing monooxygenase.	0.508
A0A368SA46	K3ZSC7_SETIT	A0A368SA46	K3ZSC7	Uncharacterized protein.	Flavin-containing monooxygenase.	0.502
A0A368SA46	K4A899_SETIT	A0A368SA46	K4A899	Uncharacterized protein.	Flavin-containing monooxygenase.	0.489
A0A368SA46	K4A8C0_SETIT	A0A368SA46	K4A8C0	Uncharacterized protein.	Flavin-containing monooxygenase.	0.506
A0A368SA46	K4A8H2_SETIT	A0A368SA46	K4A8H2	Uncharacterized protein.	Flavin-containing monooxygenase.	0.492
A0A368SQ23	A0A368SA46	A0A368SQ23	A0A368SA46	Flavin-containing monooxygenase.	Uncharacterized protein.	0.504

page 1 of 2

Server load: low (18%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About