STRINGSTRING
Si001796m protein (Setaria italica) - STRING interaction network
"Si001796m" - Uncharacterized protein in Setaria italica
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Si001796mUncharacterized protein (388 aa)    
Predicted Functional Partners:
Si013997m
RING-type E3 ubiquitin transferase (356 aa)
           
  0.580
Si016453m
RING-type E3 ubiquitin transferase (733 aa)
           
  0.575
Si028902m
Serine/threonine-protein kinase (864 aa)
           
  0.493
Si028894m
Serine/threonine-protein kinase (871 aa)
           
  0.493
Si034728m
Uncharacterized protein (619 aa)
           
  0.424
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
Server load: low (8%) [HD]