• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Mvol_0933 protein (Methanococcus voltae) - STRING interaction network
"Mvol_0933" - UPF0107 protein Mvol_0933 in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvol_0933UPF0107 protein Mvol_0933; PFAM- protein of unknown function DUF126; KEGG- bch-Bcen2424_6625 hypothetical protein; Belongs to the UPF0107 family (133 aa)    
Predicted Functional Partners:
Mvol_1301
PFAM- protein of unknown function DUF521; KEGG- bcm-Bcenmc03_6224 hypothetical protein (424 aa)
 
     
  0.988
albA
DNA/RNA-binding protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family (97 aa)
 
          0.625
Mvol_1384
KEGG- afw-Anae109_2409 radical SAM domain-containing protein; PFAM- Radical SAM domain protein; cobalamin B12-binding domain protein; SMART- Elongator protein 3/MiaB/NifB (389 aa)
              0.611
Mvol_0932
KEGG- sfu-Sfum_2220 hydrogenase maturation protease; TIGRFAM- coenzyme F420-reducing hydrogenase delta subunit; hydrogenase maturation protease; PFAM- peptidase M52 hydrogen uptake protein (159 aa)
              0.579
tmk
TIGRFAM- thymidylate kinase; KEGG- scl-sce0834 putative thymidylate kinase; PFAM- thymidylate kinase (223 aa)
              0.576
Mvol_0931
PFAM- phosphoesterase DHHA1; phosphoesterase RecJ domain protein; KEGG- hypothetical protein (497 aa)
 
          0.463
Mvol_1687
PFAM- Transcription factor CBF/NF-Y/histone domain protein; Histone core domain protein (67 aa)
   
          0.438
thrS
Threonine--tRNA ligase; KEGG- gbm-Gbem_1990 threonyl-tRNA synthetase; TIGRFAM- threonyl-tRNA synthetase; PFAM- Threonyl-tRNA synthetase editing domain protein; tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Belongs to the class-II aminoacyl-tRNA synthetase family (629 aa)
   
          0.429
Mvol_0145
PFAM- Transcription factor CBF/NF-Y/histone domain protein; Histone core domain protein (66 aa)
   
          0.412
Mvol_0996
PFAM- Protein of unknown function UPF0147; Belongs to the UPF0147 family (92 aa)
 
          0.410
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
Server load: low (7%) [HD]