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rpl30e protein (Methanococcus voltae) - STRING interaction network
"rpl30e" - PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45 in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl30ePFAM- ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG- RPL30; ribosomal protein L30; K02908 large subunit ribosomal protein L30e; Belongs to the eukaryotic ribosomal protein eL30 family (99 aa)    
Predicted Functional Partners:
rpl19e
50S ribosomal protein L19e; Binds to the 23S rRNA (149 aa)
   
 
  0.999
rpl34e
PFAM- Ribosomal protein L34e; KEGG- similar to predicted protein; K02915 large subunit ribosomal protein L34e; Belongs to the eukaryotic ribosomal protein eL34 family (88 aa)
   
 
  0.999
rpl24
50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit (119 aa)
   
 
  0.999
rpl18e
PFAM- ribosomal protein L15; KEGG- hypothetical protein; K02883 large subunit ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family (124 aa)
   
 
  0.999
rps17e
30S ribosomal protein S17e; KEGG- AGAP004887-PA; K02962 small subunit ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family (65 aa)
   
 
  0.999
rpl32e
PFAM- Ribosomal protein L32e; KEGG- rpl32; 60S ribosomal protein L32; K02912 large subunit ribosomal protein L32e; Belongs to the eukaryotic ribosomal protein eL32 family (134 aa)
   
 
  0.999
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA (96 aa)
   
 
  0.999
rps4e
30S ribosomal protein S4e; KEGG- Hypothetical protein CBG05762; K02987 small subunit ribosomal protein S4e; PFAM- Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART- RNA-binding S4 domain protein; Belongs to the eukaryotic ribosomal protein eS4 family (244 aa)
   
 
  0.999
rplX
PFAM- Ribosomal LX protein (76 aa)
     
 
  0.999
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (194 aa)
   
 
  0.999
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
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