STRINGSTRING
rnp1 protein (Methanococcus voltae) - STRING interaction network
"rnp1" - Ribonuclease P, Rpp29 in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnp1Ribonuclease P, Rpp29; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends (120 aa)    
Predicted Functional Partners:
rnp4
RNAse P, Rpr2/Rpp21 subunit; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends (145 aa)
   
 
 
  0.998
rnp2
Ribonuclease P-like protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends (136 aa)
 
     
  0.843
rpl34e
50S ribosomal protein L34e (88 aa)
 
          0.825
Mvol_1056
Translation initiation factor SUI1 (102 aa)
              0.769
rpl2
50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (241 aa)
         
  0.748
rps3
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (218 aa)
         
  0.718
rpl29p
50S ribosomal protein L29 (69 aa)
              0.707
rpl24p
50S ribosomal protein L24; Located at the polypeptide exit tunnel on the outside of the subunit (119 aa)
 
          0.702
rps4e
30S ribosomal protein S4E (244 aa)
 
          0.693
rpl22
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (154 aa)
         
  0.693
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae, M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3, Methanococcus voltaei
Server load: low (14%) [HD]