• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
ef1b protein (Methanococcus voltae) - STRING interaction network
"ef1b" - Elongation factor 1-beta in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ef1bElongation factor 1-beta; Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA (89 aa)    
Predicted Functional Partners:
rps3
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (218 aa)
   
   
  0.985
rpl21e
PFAM- Ribosomal protein L21e; KEGG- hypothetical protein; K02889 large subunit ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family (97 aa)
 
 
  0.978
rpl22
50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (154 aa)
   
   
  0.977
rpl18e
PFAM- ribosomal protein L15; KEGG- hypothetical protein; K02883 large subunit ribosomal protein L18e; Belongs to the eukaryotic ribosomal protein eL18 family (124 aa)
   
 
  0.968
rpl15e
PFAM- Ribosomal protein L15e; KEGG- hypothetical protein LOC100263573; Belongs to the eukaryotic ribosomal protein eL15 family (194 aa)
     
 
  0.964
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (194 aa)
   
   
  0.952
rpl6
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center (182 aa)
   
   
  0.952
rpl5
50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (181 aa)
   
   
  0.950
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (160 aa)
     
   
  0.950
rps4e
30S ribosomal protein S4e; KEGG- Hypothetical protein CBG05762; K02987 small subunit ribosomal protein S4e; PFAM- Ribosomal protein S4E, central domain protein; Ribosomal protein S4E domain protein; RNA-binding S4 domain protein; SMART- RNA-binding S4 domain protein; Belongs to the eukaryotic ribosomal protein eS4 family (244 aa)
   
   
  0.950
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
Server load: low (12%) [HD]