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STRINGSTRING
Mvol_1139 protein (Methanococcus voltae) - STRING interaction network
"Mvol_1139" - PFAM: TatD-related deoxyribonuclease in Methanococcus voltae
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
Mvol_1139PFAM- TatD-related deoxyribonuclease; KEGG- gur-Gura_2510 TatD family hydrolase (347 aa)    
Predicted Functional Partners:
Mvol_1138
annotation not available (110 aa)
              0.758
Mvol_0544
TPR repeat-containing protein; KEGG- hhe-HH1443 putative endonuclease; PFAM- TPR repeat-containing protein; ATPase associated with various cellular activities AAA_5; Tetratricopeptide TPR_2 repeat protein; SMART- Tetratricopeptide repeat (890 aa)
 
   
  0.754
Mvol_1137
PFAM- Uncharacterised conserved protein UCP037052 (178 aa)
              0.751
Mvol_0867
DNA-(Apurinic or apyrimidinic site) lyase; PFAM- protein of unknown function DUF123; helix-hairpin-helix motif; HhH-GPD family protein; KEGG- dps-DP2416 exodeoxyribonuclease (ExoA); SMART- HhH-GPD family protein; Excinuclease ABC C subunit domain protein (366 aa)
 
        0.741
uppS
Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific); Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids (264 aa)
 
      0.695
ksgA
Probable ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (275 aa)
 
   
  0.685
pyrB
TIGRFAM- aspartate carbamoyltransferase; KEGG- vvu-VV1_1465 aspartate carbamoyltransferase catalytic subunit; PFAM- aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region (302 aa)
              0.684
Mvol_0369
KEGG- nis-NIS_0367 anaerobic glycerol-3-phosphate dehydrogenase subunit C; TIGRFAM- succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM- protein of unknown function DUF224 cysteine-rich region domain protein; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein (540 aa)
         
  0.658
Mvol_1068
KEGG- dvu-DVU0105 glutamine ABC transporter, ATP-binding protein; PFAM- ABC transporter related; SMART- AAA ATPase (243 aa)
 
          0.645
srp54
Signal recognition particle 54 kDa protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY; Belongs to the GTP-binding SRP family. SRP54 subfamily (450 aa)
 
   
  0.599
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
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