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rps15 protein (Methanococcus voltae) - STRING interaction network
"rps15" - PFAM: Ribosomal S13S15 domain protein in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps15PFAM- Ribosomal S13S15 domain protein; ribosomal protein S15; KEGG- 40S ribosomal protein S13; K02953 small subunit ribosomal protein S13e (151 aa)    
Predicted Functional Partners:
rpl18
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (194 aa)
 
 
  0.999
rps3
30S ribosomal protein S3; Binds the lower part of the 30S subunit head (218 aa)
 
 
  0.999
rpl23
50S ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome (86 aa)
   
 
  0.999
rpl15e
PFAM- Ribosomal protein L15e; KEGG- hypothetical protein LOC100263573; Belongs to the eukaryotic ribosomal protein eL15 family (194 aa)
   
 
  0.999
rps17
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (108 aa)
 
 
  0.999
rps10
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (102 aa)
   
 
  0.999
rpl31e
PFAM- Ribosomal protein L31e; KEGG- rpl31; 60S ribosomal protein L31; K02910 large subunit ribosomal protein L31e; Belongs to the ribosomal protein L31e family (83 aa)
 
 
  0.999
rpl29
50S ribosomal protein L29; KEGG- similar to predicted protein; K02918 large subunit ribosomal protein L35e; TIGRFAM- ribosomal protein L29; PFAM- ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family (69 aa)
   
 
  0.999
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (141 aa)
 
 
  0.999
rps17e
30S ribosomal protein S17e; KEGG- AGAP004887-PA; K02962 small subunit ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family (65 aa)
 
 
  0.999
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
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