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STRINGSTRING
Mvol_1209 protein (Methanococcus voltae) - STRING interaction network
"Mvol_1209" - PFAM: Ribosome maturation protein SBDS-like in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mvol_1209PFAM- Ribosome maturation protein SBDS-like; KEGG- hypothetical protein, conserved (234 aa)    
Predicted Functional Partners:
fusA
Elongation factor 2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (727 aa)
 
 
 
  0.874
psmA
Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation (254 aa)
 
   
  0.863
rpl15e
PFAM- Ribosomal protein L15e; KEGG- hypothetical protein LOC100263573; Belongs to the eukaryotic ribosomal protein eL15 family (194 aa)
 
   
  0.824
pfdB
Prefoldin subunit beta; Molecular chaperone capable of stabilizing a range of proteins. Seems to fulfill an ATP-independent, HSP70-like function in archaeal de novo protein folding (113 aa)
 
        0.798
Mvol_1206
Probable Brix domain-containing ribosomal biogenesis protein; Probably involved in the biogenesis of the ribosome (180 aa)
   
 
  0.708
rplX
PFAM- Ribosomal LX protein (76 aa)
         
  0.689
rpl37ae
50S ribosomal protein L37Ae; Binds to the 23S rRNA (96 aa)
              0.684
eif6
Translation initiation factor 6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex (227 aa)
 
 
  0.657
rnp3
Ribonuclease P protein component 3; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family (263 aa)
              0.648
rps8e
KEGG- 40S ribosomal protein S8 (RPS8A); K02995 small subunit ribosomal protein S8e; TIGRFAM- ribosomal protein S8e; PFAM- Ribosomal protein S8E (128 aa)
   
   
  0.641
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
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