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trm1 protein (Methanococcus voltae) - STRING interaction network
"trm1" - tRNA in Methanococcus voltae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trm1tRNA (guanine(26)-N(2))-dimethyltransferase; Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups (376 aa)    
Predicted Functional Partners:
tgtA
tRNA-guanine(15) transglycosylase; Exchanges the guanine residue with 7-cyano-7- deazaguanine (preQ0) at position 15 in the dihydrouridine loop (D- loop) of archaeal tRNAs; Belongs to the archaeosine tRNA-ribosyltransferase family (675 aa)
     
   
  0.999
Mvol_0534
TIGRFAM- CRISPR-associated protein, Crm2 family; KEGG- conserved hypothetical protein (580 aa)
       
      0.992
Mvol_0853
PFAM- Pre-mRNA processing ribonucleoprotein, binding domain protein; NOSIC domain protein; KEGG- hypothetical protein (531 aa)
 
   
  0.959
Mvol_1365
PFAM- NMD3 family protein; KEGG- nonsense-mediated mRNA decay protein; K07562 nonsense-mediated mRNA decay protein 3 (377 aa)
   
        0.942
Mvol_1562
PFAM- putative RNA methylase; THUMP domain protein; KEGG- TRMT11; tRNA methyltransferase 11 homolog (S. cerevisiae) (420 aa)
   
 
  0.939
Mvol_0893
KEGG- hypothetical protein; TIGRFAM- small GTP-binding protein; PFAM- GTP-binding protein HSR1-related; Nucleolar GTP-binding-1 domain protein; Miro domain protein (354 aa)
 
        0.933
Mvol_1140
SMART- Elongator protein 3/MiaB/NifB; TIGRFAM- histone acetyltransferase, ELP3 family; KEGG- histone acetyltransferase gcn5-type hat; K07739 elongator complex protein 3; PFAM- Radical SAM domain protein; GCN5-related N-acetyltransferase (553 aa)
   
        0.895
rlmE
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (298 aa)
     
 
  0.886
pus10
tRNA pseudouridine synthase Pus10; Responsible for synthesis of pseudouridine from uracil- 54 and uracil-55 in the psi GC loop of transfer RNAs (519 aa)
   
   
  0.883
Mvol_0555
Hydrolase of the HD superfamily (Permuted catalytic motifs)-like protein; KEGG- sat-SYN_02251 HD superfamily hydrolase (585 aa)
       
      0.875
Your Current Organism:
Methanococcus voltae
NCBI taxonomy Id: 456320
Other names: M. voltae A3, Methanococcus voltae, Methanococcus voltae A3, Methanococcus voltae str. A3, Methanococcus voltae strain A3
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