STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_0168Aminotransferase, class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: sus:Acid_3616 aminotransferase, class I and II. (400 aa)    
Predicted Functional Partners:
Mboo_1995
PFAM: aminotransferase, class V; Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sil:SPO0413 Cys/Met metabolism PLP-dependent enzyme family protein.
  
 
 0.934
Mboo_0104
PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin-independent synthase MetE, N-terminal domain protein; KEGG: mhu:Mhun_2447 methionine synthase, vitamin-B12 independent.
  
 
 0.922
mat
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP; Belongs to the AdoMet synthase 2 family.
    
 0.907
Mboo_1996
PFAM: aminotransferase, class I and II; KEGG: sus:Acid_3616 aminotransferase, class I and II.
  
  
 
0.901
Mboo_0169
KEGG: rru:Rru_A0790 phenylacetate--CoA ligase.
  
    0.735
Mboo_1046
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: diaminopimelate decarboxylase.
 
  
 0.552
Mboo_0167
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: mka:MK0601 homolog of ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, periplasmic component.
 
   
 0.532
Mboo_0170
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: sat:SYN_00691 pyruvate synthase subunit.
  
  
 0.509
Mboo_0173
TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mhu:Mhun_2393 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate.
     
 0.502
Mboo_0171
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: sat:SYN_00692 pyruvate synthase alpha chain.
  
  
 0.500
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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