STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_1537Alpha-amylase; PFAM: glycoside hydrolase, family 57; KEGG: mhu:Mhun_0836 alpha-amylase. (484 aa)    
Predicted Functional Partners:
Mboo_1526
KEGG: mhu:Mhun_1203 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylases; PFAM: glycosyl transferase, family 35.
 
 
 0.964
Mboo_1538
PFAM: glycosyl transferase, group 1; KEGG: mhu:Mhun_1784 glycosyl transferase, group 1.
 
  
 0.930
Mboo_1522
PFAM: Amylo-alpha-1,6-glucosidase; KEGG: mtp:Mthe_0254 glycogen debranching enzyme, putative.
 
  
 0.793
Mboo_1535
Hypothetical protein.
       0.777
Mboo_1536
Hypothetical protein.
       0.773
Mboo_1524
PFAM: glycosyl transferase, group 1; Starch synthase catalytic domain protein; KEGG: mhu:Mhun_1784 glycosyl transferase, group 1.
 
  
 0.703
Mboo_1523
PFAM: glycosyl transferase, group 1; KEGG: mtp:Mthe_1551 glycosyl transferase, group 1.
 
  
 0.682
Mboo_1534
Hypothetical protein.
       0.682
Mboo_1539
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: mac:MA1003 Fmn oxidoreductase protein.
  
    0.593
Mboo_0269
KEGG: mhu:Mhun_2835 hypothetical protein.
  
    0.422
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.