STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mboo_2378PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deh:cbdb_A1462 peptide ABC transporter, permease protein. (327 aa)    
Predicted Functional Partners:
Mboo_2377
PFAM: extracellular solute-binding protein, family 5; KEGG: pho:PH0807 putative oligopeptide transport system substrate-binding protein.
 0.999
Mboo_2379
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: deh:cbdb_A1461 peptide ABC transporter, permease protein.
 
 0.999
Mboo_2380
KEGG: mac:MA0879 oligopeptide ABC transporter, ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase.
 0.999
Mboo_2381
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM3323 oligopeptide transporter, ATP-binding protein.
 
 0.999
Mboo_2434
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_2311 ABC transporter related.
 
  
 0.883
Mboo_1918
TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mhu:Mhun_2982 phosphate ABC transporter, permease protein PstC.
     
 0.628
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
  
 0.565
Mboo_2382
KEGG: mhu:Mhun_0268 protein of unknown function DUF1628.
       0.447
Mboo_1354
PFAM: homoserine dehydrogenase; homoserine dehydrogenase, NAD-binding; KEGG: mhu:Mhun_2292 homoserine dehydrogenase.
 
  
 0.442
Mboo_1303
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM2387 cobalt transport ATP-binding protein.
   
 0.438
Your Current Organism:
Methanoregula boonei
NCBI taxonomy Id: 456442
Other names: Candidatus Methanoregula boonei 6A8, M. boonei 6A8, Methanoregula boonei 6A8, Methanoregula boonei str. 6A8, Methanoregula boonei strain 6A8, methanogenic archaeon 6A8
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