STRINGSTRING
RSAG_00089 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00089" - Diguanylate cyclase in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00089Diguanylate cyclase (GGDEF) domain-containing protein (650 aa)    
Predicted Functional Partners:
RSAG_02777
Diguanylate cyclase (GGDEF) domain-containing protein (557 aa)
 
  0.924
RSAG_00227
Diguanylate cyclase (GGDEF) domain-containing protein (659 aa)
 
0.893
RSAG_02176
Uncharacterized protein (230 aa)
 
  0.886
RSAG_01994
Uncharacterized protein (222 aa)
 
  0.886
RSAG_01828
Uncharacterized protein (233 aa)
 
  0.886
RSAG_00716
Uncharacterized protein (222 aa)
   
  0.886
RSAG_00368
Uncharacterized protein (234 aa)
 
  0.886
RSAG_03190
Uncharacterized protein (247 aa)
   
  0.884
RSAG_00578
Uncharacterized protein (233 aa)
 
  0.884
RSAG_00474
Uncharacterized protein (234 aa)
 
  0.884
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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