STRINGSTRING
RSAG_04720 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_04720" - YggS family pyridoxal phosphate enzyme in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_04720YggS family pyridoxal phosphate enzyme (192 aa)    
Predicted Functional Partners:
RSAG_02659
5’-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 ; Catalyzes the irreversible cleavage of the glycosidic bond in both 5’-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5’-methylthioribose and S-ribosylhomocysteine, respectively (232 aa)
            0.777
proC
PCA reductase ; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline (264 aa)
 
   
  0.692
rlmN
tRNA m2A37 methyltransferase ; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs (346 aa)
   
        0.680
RSAG_03473
Uncharacterized protein (519 aa)
   
 
    0.620
RSAG_02207
Uncharacterized protein (395 aa)
   
 
    0.620
dapL
LL-diaminopimelate aminotransferase ; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli (404 aa)
   
 
    0.620
RSAG_02939
Uncharacterized protein (384 aa)
       
    0.608
iscS
Cysteine desulfurase IscS ; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins (394 aa)
       
    0.608
RSAG_02261
Cysteine desulfurase (387 aa)
       
    0.606
RSAG_02145
Uncharacterized protein (380 aa)
 
        0.594
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (14%) [HD]