STRINGSTRING
RSAG_00173 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00173" - Sporulation protein YqfC in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00173Sporulation protein YqfC (104 aa)    
Predicted Functional Partners:
RSAG_00172
Sporulation protein YqfD (394 aa)
 
          0.898
RSAG_00170
Uncharacterized protein (336 aa)
              0.720
ybeY
Endoribonuclease YbeY ; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3’ terminus of the 16S rRNA (164 aa)
              0.720
RSAG_00174
Uncharacterized protein (178 aa)
              0.709
RSAG_02395
Uncharacterized protein (109 aa)
   
          0.608
rlmH
rRNA (pseudouridine-N3-)-methyltransferase RlmH ; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA (159 aa)
              0.602
RSAG_00766
Stage III sporulation protein AE (409 aa)
   
          0.576
RSAG_02658
Uncharacterized protein (122 aa)
   
          0.565
RSAG_00763
Uncharacterized protein (230 aa)
   
          0.504
RSAG_00176
Uncharacterized protein (363 aa)
              0.493
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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