STRINGSTRING
RSAG_00257 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00257" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00257Uncharacterized protein (165 aa)    
Predicted Functional Partners:
RSAG_00260
Uncharacterized protein (393 aa)
 
   
  0.889
RSAG_00256
Uncharacterized protein (1109 aa)
 
          0.811
RSAG_00261
Uncharacterized protein (510 aa)
 
     
  0.781
RSAG_00259
Uncharacterized protein (152 aa)
 
          0.773
RSAG_00258
Uncharacterized protein (140 aa)
 
          0.768
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (689 aa)
   
   
  0.699
RSAG_00715
DNA topoisomerase (734 aa)
   
   
  0.699
RSAG_00262
Uncharacterized protein (351 aa)
              0.482
RSAG_02164
Uncharacterized protein (178 aa)
   
          0.455
RSAG_01228
DNA polymerase I (849 aa)
         
  0.447
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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