STRINGSTRING
RSAG_00442 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00442" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00442Uncharacterized protein (783 aa)    
Predicted Functional Partners:
RSAG_03045
Uncharacterized protein (112 aa)
     
    0.951
RSAG_01176
Exonuclease SbcCD, D subunit (1275 aa)
     
 
  0.949
RSAG_01997
Small GTP-binding protein (900 aa)
     
  0.942
fusA
Elongation factor G ; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (706 aa)
     
  0.942
RSAG_01090
Translation elongation factor G (696 aa)
     
  0.942
RSAG_02897
Uncharacterized protein (671 aa)
     
  0.849
RSAG_01228
DNA polymerase I (849 aa)
     
  0.816
RSAG_02654
Uncharacterized protein (801 aa)
     
    0.769
RSAG_02107
Uncharacterized protein (501 aa)
     
    0.769
sbcC
Nuclease SbcCD subunit C ; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3’->5’ double strand exonuclease that can open hairpins. It also has a 5’ single-strand endonuclease activity (1117 aa)
     
 
  0.769
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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