STRINGSTRING
RSAG_00447 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00447" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00447Uncharacterized protein (264 aa)    
Predicted Functional Partners:
RSAG_00446
Uncharacterized protein (325 aa)
 
          0.968
topA
DNA topoisomerase I ; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5’-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3’-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (689 aa)
   
   
  0.699
RSAG_00715
DNA topoisomerase (734 aa)
   
   
  0.699
RSAG_00445
Uncharacterized protein (241 aa)
              0.665
RSAG_00444
Uncharacterized protein (86 aa)
              0.665
RSAG_00260
Uncharacterized protein (393 aa)
   
   
  0.545
RSAG_03493
Uncharacterized protein (393 aa)
 
          0.515
RSAG_01951
Uncharacterized protein (353 aa)
   
          0.500
RSAG_00343
Uncharacterized protein (614 aa)
   
        0.484
RSAG_00441
Uncharacterized protein ; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules (317 aa)
     
 
  0.458
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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