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RSAG_00487 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00487" - Sigma-70 family RNA polymerase sigma factor in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00487Sigma-70 family RNA polymerase sigma factor (180 aa)    
Predicted Functional Partners:
RSAG_02699
RNA polymerase sigma factor (168 aa)
   
          0.763
RSAG_01459
RNA polymerase sigma factor (169 aa)
   
          0.615
RSAG_01880
Sigma-70 family RNA polymerase sigma factor (179 aa)
   
          0.519
RSAG_03470
Uncharacterized protein (441 aa)
   
   
  0.472
RSAG_02110
Uncharacterized protein (471 aa)
   
   
  0.472
RSAG_01826
Uncharacterized protein (437 aa)
   
   
  0.472
RSAG_02155
Uncharacterized protein (429 aa)
         
  0.445
RSAG_03472
Signal peptidase I (189 aa)
              0.438
RSAG_03178
Uncharacterized protein (257 aa)
              0.438
RSAG_02289
Uncharacterized protein (272 aa)
              0.438
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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