STRINGSTRING
RSAG_00535 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00535" - Excisionase family DNA binding domain-containing protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00535Excisionase family DNA binding domain-containing protein (77 aa)    
Predicted Functional Partners:
RSAG_00534
Uncharacterized protein (399 aa)
 
          0.941
RSAG_00549
Uncharacterized protein (399 aa)
 
          0.869
RSAG_00584
Uncharacterized protein (146 aa)
   
          0.778
RSAG_00570
No annotation available (52 aa)
   
          0.778
RSAG_00806
Sigma-70 family RNA polymerase sigma factor (139 aa)
 
          0.727
RSAG_00121
Uncharacterized protein (226 aa)
 
          0.676
RSAG_04532
Uncharacterized protein (315 aa)
 
          0.672
RSAG_00536
No annotation available (104 aa)
              0.667
RSAG_01265
Sigma-70 family RNA polymerase sigma factor (147 aa)
   
          0.573
RSAG_00807
Uncharacterized protein (118 aa)
   
          0.566
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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