STRINGSTRING
RSAG_00627 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00627" - Laccase domain protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00627Laccase domain protein (283 aa)    
Predicted Functional Partners:
RSAG_00628
UPF0102 protein RSAG_00628 (121 aa)
              0.734
rnhB
Ribonuclease HII ; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (251 aa)
   
        0.678
RSAG_00630
Ribosome biogenesis GTPase A ; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity (283 aa)
              0.673
RSAG_02727
Uncharacterized protein (397 aa)
   
          0.655
murD
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase ; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) (451 aa)
 
        0.597
RSAG_00112
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (304 aa)
 
        0.595
RSAG_01288
Pseudouridine synthase ; Responsible for synthesis of pseudouridine from uracil (299 aa)
 
        0.584
RSAG_00132
Uncharacterized protein (386 aa)
 
      0.558
murC
UDP-N-acetylmuramoyl-L-alanine synthetase ; Cell wall formation (467 aa)
 
        0.537
RSAG_00109
Uncharacterized protein (250 aa)
   
   
  0.526
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (8%) [HD]