STRINGSTRING
RSAG_00806 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00806" - Sigma-70 family RNA polymerase sigma factor in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00806Sigma-70 family RNA polymerase sigma factor (139 aa)    
Predicted Functional Partners:
RSAG_00805
Uncharacterized protein (79 aa)
 
          0.972
RSAG_00812
Uncharacterized protein (300 aa)
   
     
  0.777
RSAG_00814
Uncharacterized protein (715 aa)
   
     
  0.776
RSAG_00818
Uncharacterized protein (167 aa)
   
     
  0.772
RSAG_00821
Uncharacterized protein (73 aa)
   
          0.769
RSAG_00807
Uncharacterized protein (118 aa)
 
          0.761
RSAG_00815
Uncharacterized protein (817 aa)
   
          0.759
RSAG_00816
Uncharacterized protein (129 aa)
   
   
  0.754
RSAG_00830
Uncharacterized protein (107 aa)
   
     
  0.750
RSAG_00813
Uncharacterized protein (335 aa)
   
     
  0.728
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (9%) [HD]