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RSAG_00837 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00837" - Sigma-E processing peptidase SpoIIGA in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00837Sigma-E processing peptidase SpoIIGA (285 aa)    
Predicted Functional Partners:
RSAG_00836
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (238 aa)
              0.834
RSAG_02196
Uncharacterized protein (254 aa)
   
          0.767
RSAG_02658
Uncharacterized protein (122 aa)
   
          0.762
RSAG_01037
Oxaloacetate decarboxylase gamma chain (234 aa)
   
          0.750
RSAG_00012
Uncharacterized protein (217 aa)
   
          0.744
RSAG_01898
Uncharacterized protein (353 aa)
   
          0.742
RSAG_00228
Uncharacterized protein (635 aa)
   
          0.732
RSAG_01687
Uncharacterized protein (188 aa)
   
          0.731
RSAG_02629
Uncharacterized protein (451 aa)
   
          0.717
RSAG_02628
Uncharacterized protein (415 aa)
   
          0.698
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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