STRINGSTRING
RSAG_00854 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00854" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00854Uncharacterized protein (230 aa)    
Predicted Functional Partners:
RSAG_02897
Uncharacterized protein (671 aa)
     
  0.959
RSAG_00855
Uncharacterized protein (239 aa)
 
     
  0.895
sigA
RNA polymerase sigma factor SigA ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (375 aa)
       
  0.894
rpoA
Transcriptase subunit alpha ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (319 aa)
     
 
  0.858
hcp
Prismane protein ; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O (532 aa)
 
     
  0.827
RSAG_02654
Uncharacterized protein (801 aa)
     
  0.708
RSAG_02107
Uncharacterized protein (501 aa)
     
  0.708
RSAG_01729
Uncharacterized protein (690 aa)
       
    0.682
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1251 aa)
     
      0.672
RSAG_02378
Uncharacterized protein (727 aa)
     
  0.640
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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