STRINGSTRING
RSAG_00920 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_00920" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_00920Uncharacterized protein (335 aa)    
Predicted Functional Partners:
rny
Ribonuclease Y ; Endoribonuclease that initiates mRNA decay (519 aa)
 
   
  0.752
pnp
Polynucleotide phosphorylase ; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction (697 aa)
       
    0.685
RSAG_01512
Uncharacterized protein (104 aa)
         
    0.676
RSAG_02173
Uncharacterized protein (625 aa)
       
    0.609
RSAG_00048
Uncharacterized protein (623 aa)
       
    0.609
RSAG_00855
Uncharacterized protein (239 aa)
       
    0.605
RSAG_00919
Uncharacterized protein (153 aa)
              0.586
RSAG_00918
Uncharacterized protein (113 aa)
              0.586
RSAG_01973
Universal bacterial protein YeaZ (242 aa)
     
      0.545
ftsY
Signal recognition particle receptor FtsY ; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC) (316 aa)
 
        0.519
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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