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rpmB protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"rpmB" - 50S ribosomal protein L28 in Ruminococcus sp. 5139BFAA
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpmB50S ribosomal protein L28 (82 aa)    
Predicted Functional Partners:
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
   
  0.995
rpmG
50S ribosomal protein L33 (52 aa)
 
  0.995
rplQ
50S ribosomal protein L17 (178 aa)
   
  0.994
rpmA
50S ribosomal protein L27 (95 aa)
   
  0.993
rpmF
50S ribosomal protein L32 (60 aa)
   
  0.989
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
   
  0.989
rplP
50S ribosomal protein L16 ; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (145 aa)
     
  0.987
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (210 aa)
     
  0.986
rplL
50S ribosomal protein L7/L12 ; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (123 aa)
     
  0.985
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (206 aa)
     
  0.985
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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