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gmd protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"gmd" - GDP-D-mannose dehydratase in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-D-mannose dehydratase ; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (350 aa)    
Predicted Functional Partners:
fcl
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase ; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (314 aa)
 
  0.997
RSAG_01001
Uncharacterized protein (438 aa)
 
 
  0.960
RSAG_04685
Uncharacterized protein (576 aa)
   
 
  0.873
RSAG_02803
Uncharacterized protein (702 aa)
   
  0.840
RSAG_02125
TDP-4-keto-6-deoxy-D-glucose transaminase (376 aa)
       
  0.837
RSAG_01312
Uncharacterized protein (108 aa)
   
 
  0.798
RSAG_00383
Uncharacterized protein (962 aa)
   
 
  0.797
RSAG_02800
Uncharacterized protein (459 aa)
   
 
  0.796
RSAG_01022
Uncharacterized protein (355 aa)
   
 
  0.796
RSAG_01019
Uncharacterized protein (377 aa)
   
 
  0.796
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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