STRINGSTRING
RSAG_04678 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_04678" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_04678Uncharacterized protein (439 aa)    
Predicted Functional Partners:
RSAG_01044
Uncharacterized protein (305 aa)
              0.640
RSAG_03473
Uncharacterized protein (519 aa)
     
 
    0.612
RSAG_02207
Uncharacterized protein (395 aa)
     
 
    0.612
dapL
LL-diaminopimelate aminotransferase ; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli (404 aa)
     
 
    0.612
RSAG_01046
Uncharacterized protein (515 aa)
 
          0.606
RSAG_01290
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase (402 aa)
       
    0.605
RSAG_04675
Uncharacterized protein (467 aa)
              0.534
RSAG_01048
Uncharacterized protein (294 aa)
              0.446
RSAG_01047
Uncharacterized protein (281 aa)
              0.446
RSAG_01300
Uncharacterized protein (223 aa)
              0.438
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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