STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
TIGR00255 family protein (293 aa)
Predicted Functional Partners:
GMP kinase ; Essential for recycling GMP and indirectly, cGMP (207 aa)
UPF0296 protein RSAG_01084 (90 aa)
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (119 aa)
Competence/damage-inducible protein CinA domain (187 aa)
Ribosome maturation factor RimO ; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12 (445 aa)
Nicotinate mononucleotide adenylyltransferase ; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD) (211 aa)
Polypeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (158 aa)
RNA methyltransferase, TrmH family, group 3 (245 aa)
Cytidine monophosphate kinase (223 aa)
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412 Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Polypeptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions
UPF0296 protein RSAG_01084
GMP kinase ; Essential for recycling GMP and indirectly, cGMP
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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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For the above enrichment analysis, the following statistical background is assumed: