STRINGSTRING
RSAG_01297 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_01297" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_01297Uncharacterized protein (403 aa)    
Predicted Functional Partners:
RSAG_01296
Uncharacterized protein (331 aa)
              0.643
RSAG_01560
TRAP transporter, DctM subunit (1110 aa)
 
   
  0.633
RSAG_02552
L-serine dehydratase, iron-sulfur-dependent, alpha subunit (289 aa)
   
        0.449
RSAG_02551
L-serine dehydratase, iron-sulfur-dependent, beta subunit (222 aa)
   
        0.449
RSAG_02535
UPF0597 protein RSAG_02535 (425 aa)
              0.438
aroC
5-enolpyruvylshikimate-3-phosphate phospholyase ; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system (364 aa)
              0.438
RSAG_04678
Uncharacterized protein (439 aa)
              0.438
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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