STRINGSTRING
RSAG_01321 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_01321" - UPF0178 protein RSAG_01321 in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_01321UPF0178 protein RSAG_01321 (151 aa)    
Predicted Functional Partners:
RSAG_01322
Uncharacterized protein (125 aa)
              0.840
RSAG_01323
Peptide deformylase ; Removes the formyl group from the N-terminal Met of newly synthesized proteins (136 aa)
              0.785
RSAG_01320
Uncharacterized protein (509 aa)
   
        0.736
RSAG_01319
Uncharacterized protein (137 aa)
              0.699
RSAG_01315
Uncharacterized protein (165 aa)
 
        0.556
RSAG_01324
IS605 OrfB family transposase (397 aa)
              0.456
dnaG
DNA primase ; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (598 aa)
              0.438
RSAG_02766
Uncharacterized protein (234 aa)
              0.438
RSAG_02755
Uncharacterized protein (278 aa)
              0.438
rplT
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (118 aa)
              0.438
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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