STRINGSTRING
RSAG_01501 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_01501" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_01501Uncharacterized protein (696 aa)    
Predicted Functional Partners:
RSAG_03495
Uncharacterized protein (452 aa)
   
          0.705
RSAG_00469
IS605 OrfB family transposase (442 aa)
   
          0.628
RSAG_00428
IS605 OrfB family transposase (442 aa)
   
          0.627
RSAG_04653
IS605 OrfB family transposase (278 aa)
   
          0.612
rplL
50S ribosomal protein L7/L12 ; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (123 aa)
              0.611
RSAG_00508
Uncharacterized protein (673 aa)
   
          0.581
RSAG_02329
Uncharacterized protein (555 aa)
   
          0.491
RSAG_01660
Uncharacterized protein (808 aa)
   
          0.490
rpoB
Transcriptase subunit beta ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1286 aa)
              0.490
rpoC
Transcriptase subunit beta’ ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1251 aa)
              0.463
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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