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RSAG_01560 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_01560" - TRAP transporter, DctM subunit in Ruminococcus sp. 5139BFAA
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_01560TRAP transporter, DctM subunit (1110 aa)    
Predicted Functional Partners:
RSAG_01559
Uncharacterized protein (184 aa)
 
          0.965
RSAG_00212
Pyruvate-flavodoxin oxidoreductase ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1178 aa)
         
  0.895
RSAG_00775
Acetyl-CoA carboxylase, carboxyl transferase, alpha subunit (571 aa)
   
 
    0.819
RSAG_03014
TAXI family TRAP transporter solute receptor (333 aa)
   
          0.743
RSAG_03013
TRAP transporter, 4TM/12TM fusion protein (655 aa)
   
   
 
0.697
RSAG_02219
Aldehyde-alcohol dehydrogenase (885 aa)
       
  0.685
RSAG_00461
Uncharacterized protein (432 aa)
   
          0.675
RSAG_03321
Uncharacterized protein (317 aa)
   
   
    0.647
RSAG_01297
Uncharacterized protein (403 aa)
 
   
  0.633
RSAG_01228
DNA polymerase I (849 aa)
           
  0.625
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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