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RSAG_01824 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_01824" - 23S rRNA in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_0182423S rRNA (Uracil-5-)-methyltransferase RumA (545 aa)    
Predicted Functional Partners:
RSAG_02461
Uncharacterized protein (467 aa)
     
  0.942
RSAG_02375
Ribosomal RNA small subunit methyltransferase B (450 aa)
   
  0.928
RSAG_01825
Uncharacterized protein (315 aa)
              0.885
RSAG_03178
Uncharacterized protein (257 aa)
 
 
  0.768
RSAG_02289
Uncharacterized protein (272 aa)
   
 
  0.753
RSAG_01740
RNA methyltransferase, TrmH family, group 3 (245 aa)
   
 
  0.723
RSAG_02468
Uncharacterized protein (270 aa)
   
 
  0.705
RSAG_01823
Uncharacterized protein (116 aa)
              0.691
RSAG_03009
Uncharacterized protein (393 aa)
   
 
  0.667
RSAG_00005
RsmD family RNA methyltransferase (189 aa)
   
 
    0.665
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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