STRINGSTRING
RSAG_02063 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02063" - Sigma-70 family RNA polymerase sigma factor in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02063Sigma-70 family RNA polymerase sigma factor (191 aa)    
Predicted Functional Partners:
RSAG_02062
Uncharacterized protein (397 aa)
              0.859
RSAG_02305
Sigma-70 family RNA polymerase sigma factor (179 aa)
   
          0.749
RSAG_02061
Uncharacterized protein (86 aa)
              0.607
RSAG_01451
Uncharacterized protein (152 aa)
   
          0.596
RSAG_01419
Uncharacterized protein (193 aa)
   
          0.581
RSAG_02060
Uncharacterized protein (91 aa)
              0.572
RSAG_03230
Uncharacterized protein (300 aa)
   
          0.527
RSAG_02536
MATE efflux family protein (453 aa)
   
          0.454
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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