STRINGSTRING
RSAG_02123 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02123" - dTDP-4-dehydrorhamnose 3,5-epimerase in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02123dTDP-4-dehydrorhamnose 3,5-epimerase (184 aa)    
Predicted Functional Partners:
RSAG_01010
dTDP-4-dehydrorhamnose reductase (304 aa)
 
  0.993
RSAG_03012
dTDP-4-dehydrorhamnose reductase (313 aa)
 
  0.992
RSAG_01011
dTDP-glucose 4,6-dehydratase (339 aa)
 
 
  0.949
RSAG_03011
dTDP-glucose 4,6-dehydratase (342 aa)
 
 
  0.946
RSAG_02122
Transport permease protein (271 aa)
   
   
  0.904
RSAG_02125
TDP-4-keto-6-deoxy-D-glucose transaminase (376 aa)
       
  0.842
fcl
GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase ; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (314 aa)
   
  0.841
RSAG_02803
Uncharacterized protein (702 aa)
   
  0.838
RSAG_02121
Uncharacterized protein (426 aa)
   
   
  0.780
RSAG_03010
Glucose-1-phosphate thymidylyltransferase ; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (298 aa)
 
   
  0.757
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (17%) [HD]