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gpr protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"gpr" - Spore protease in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gprSpore protease ; Initiates the rapid degradation of small, acid-soluble proteins during spore germination (304 aa)    
Predicted Functional Partners:
RSAG_02148
Stage II sporulation protein P (366 aa)
 
     
  0.916
RSAG_02831
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (237 aa)
   
     
  0.818
RSAG_00836
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (238 aa)
   
     
  0.797
RSAG_03196
Stage V sporulation protein T (182 aa)
   
     
  0.797
RSAG_00050
Stage IV sporulation protein A (489 aa)
   
     
  0.794
RSAG_02830
Anti-sigma F factor (153 aa)
   
     
  0.794
RSAG_02834
Stage V sporulation protein AE (118 aa)
   
     
  0.793
RSAG_00381
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (259 aa)
   
     
  0.791
RSAG_00003
Uncharacterized protein (109 aa)
   
     
  0.791
RSAG_02951
RNA polymerase sigma factor ; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (209 aa)
   
     
  0.790
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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