STRINGSTRING
RSAG_02160 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02160" - Toxin secretion/phage lysis holin in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02160Toxin secretion/phage lysis holin (147 aa)    
Predicted Functional Partners:
RSAG_02159
Uncharacterized protein (253 aa)
 
          0.779
RSAG_00880
Uncharacterized protein (561 aa)
 
          0.594
RSAG_02161
Uncharacterized protein (119 aa)
              0.590
RSAG_00825
Uncharacterized protein (66 aa)
   
          0.570
RSAG_00276
Uncharacterized protein (570 aa)
 
          0.550
RSAG_01102
Uncharacterized protein (308 aa)
   
          0.535
RSAG_02131
Uncharacterized protein (485 aa)
 
          0.504
RSAG_00291
Uncharacterized protein (645 aa)
 
          0.476
RSAG_01808
No annotation available (56 aa)
              0.438
RSAG_01128
Phage tail tape measure protein, TP901 family, core region (1445 aa)
              0.438
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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