STRINGSTRING
RSAG_02220 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02220" - GTP-binding protein TypA/BipA in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02220GTP-binding protein TypA/BipA (610 aa)    
Predicted Functional Partners:
RSAG_01512
Uncharacterized protein (104 aa)
       
    0.685
RSAG_01513
Adenylylsulfate reductase, alpha subunit (581 aa)
     
 
    0.620
RSAG_03300
Uncharacterized protein (302 aa)
     
 
  0.608
RSAG_01031
Ribosomal protein S1 (358 aa)
     
 
  0.608
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
 
   
  0.577
RSAG_00005
RsmD family RNA methyltransferase (189 aa)
 
        0.561
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (941 aa)
   
   
0.553
rpsI
30S ribosomal protein S9 (130 aa)
   
   
  0.548
truB
tRNA-uridine isomerase ; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (295 aa)
   
   
  0.536
RSAG_02385
rRNA (cytosine-N(4)-)-methyltransferase RsmH ; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA (311 aa)
   
      0.529
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (16%) [HD]