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dapF protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"dapF" - Diaminopimelate epimerase in Ruminococcus sp. 5139BFAA
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Score
dapFDiaminopimelate epimerase ; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (284 aa)    
Predicted Functional Partners:
RSAG_01234
Diaminopimelate decarboxylase (426 aa)
   
 
  0.944
dapL
LL-diaminopimelate aminotransferase ; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli (404 aa)
 
   
  0.936
RSAG_02238
Aspartokinase (402 aa)
 
 
  0.928
RSAG_03460
Uncharacterized protein (399 aa)
 
 
  0.883
RSAG_01747
Aspartokinase (439 aa)
   
 
  0.872
RSAG_02370
UDP-N-acetylmuramyl-tripeptide synthetase (491 aa)
   
 
  0.865
dapB
4-hydroxy-tetrahydrodipicolinate reductase ; Catalyzes the conversion of 4-hydroxy- tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate (253 aa)
 
   
  0.852
RSAG_03473
Uncharacterized protein (519 aa)
       
  0.825
RSAG_02207
Uncharacterized protein (395 aa)
       
  0.825
RSAG_02598
Amidohydrolase (389 aa)
   
 
  0.813
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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