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rpmE protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"rpmE" - 50S ribosomal protein L31 in Ruminococcus sp. 5139BFAA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
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Cooccurence
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[Homology]
Score
rpmE50S ribosomal protein L31 ; Binds the 23S rRNA (70 aa)    
Predicted Functional Partners:
rplS
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
   
  0.988
rplQ
50S ribosomal protein L17 (178 aa)
   
  0.987
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
   
  0.987
rpmA
50S ribosomal protein L27 (95 aa)
   
  0.987
rpmB
50S ribosomal protein L28 (82 aa)
   
  0.983
rplR
50S ribosomal protein L18 ; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (122 aa)
   
  0.976
rplU
50S ribosomal protein L21 ; This protein binds to 23S rRNA in the presence of protein L20 (104 aa)
   
  0.969
rpmI
50S ribosomal protein L35 (65 aa)
   
  0.966
rplO
50S ribosomal protein L15 ; Binds to the 23S rRNA (146 aa)
   
  0.964
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (148 aa)
     
  0.963
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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