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rpmI protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"rpmI" - 50S ribosomal protein L35 in Ruminococcus sp. 5139BFAA
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rpmI50S ribosomal protein L35 (65 aa)    
Predicted Functional Partners:
rplT
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (118 aa)
 
  0.999
rplJ
50S ribosomal protein L10 ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (171 aa)
     
  0.990
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (142 aa)
   
  0.985
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (206 aa)
     
  0.983
rplV
50S ribosomal protein L22 ; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (129 aa)
     
  0.983
rpmC
50S ribosomal protein L29 (72 aa)
     
  0.982
rplP
50S ribosomal protein L16 ; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (145 aa)
     
  0.982
rplQ
50S ribosomal protein L17 (178 aa)
     
  0.981
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (210 aa)
     
  0.980
rpmA
50S ribosomal protein L27 (95 aa)
     
  0.979
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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