STRINGSTRING
RSAG_02404 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02404" - Uncharacterized protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02404Uncharacterized protein (170 aa)    
Predicted Functional Partners:
RSAG_02405
TIGR01212 family radical SAM protein (308 aa)
              0.780
RSAG_02221
Uncharacterized protein (208 aa)
 
          0.775
RSAG_02648
DnaD and phage-associated domain-containing protein (360 aa)
   
          0.768
RSAG_02406
Uncharacterized protein (229 aa)
 
          0.768
RSAG_02649
Uncharacterized protein (327 aa)
   
          0.729
RSAG_00840
Uncharacterized protein (181 aa)
   
          0.672
RSAG_02941
Uncharacterized protein (78 aa)
   
          0.587
RSAG_01357
Uncharacterized protein (83 aa)
   
          0.576
RSAG_03124
Uncharacterized protein (151 aa)
   
          0.542
rpoZ
Transcriptase subunit omega ; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (119 aa)
   
          0.511
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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