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whiA protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"whiA" - Putative sporulation transcription regulator WhiA in Ruminococcus sp. 5139BFAA
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiAPutative sporulation transcription regulator WhiA ; May be required for sporulation (319 aa)    
Predicted Functional Partners:
RSAG_02841
HPr family phosphocarrier (84 aa)
              0.916
RSAG_02839
Nucleotide-binding protein RSAG_02839 ; Displays ATPase and GTPase activities (295 aa)
 
   
  0.895
murB
UDP-N-acetylmuramate dehydrogenase ; Cell wall formation (306 aa)
         
  0.750
RSAG_01196
UPF0122 protein RSAG_01196 ; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein (107 aa)
   
          0.681
polC
DNA polymerase III PolC-type ; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity (1489 aa)
   
          0.630
RSAG_00761
Uncharacterized protein (128 aa)
   
          0.549
lysS
Lysyl-tRNA synthetase (678 aa)
 
          0.521
RSAG_03171
Transcript cleavage factor GreA ; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreA releases sequences of 2 to 3 nucleotides (160 aa)
 
          0.502
mrnC
Mini-RNase III ; Involved in correct processing of both the 5’ and 3’ ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors (159 aa)
   
          0.501
sepF
Cell division protein SepF ; Cell division protein that is part of the divisome complex and is recruited early to the Z-ring. Probably stimulates Z-ring formation, perhaps through the cross-linking of FtsZ protofilaments. Its function overlaps with FtsA (219 aa)
 
          0.492
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
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