STRINGSTRING
RSAG_02966 protein (Ruminococcus sp. 5139BFAA) - STRING interaction network
"RSAG_02966" - MATE efflux family protein in Ruminococcus sp. 5139BFAA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSAG_02966MATE efflux family protein (461 aa)    
Predicted Functional Partners:
RSAG_02965
No annotation available (56 aa)
              0.644
RSAG_03284
1-acyl-sn-glycerol-3-phosphate acyltransferase (237 aa)
     
    0.546
RSAG_03133
1-acyl-sn-glycerol-3-phosphate acyltransferase (248 aa)
     
    0.546
RSAG_02969
IS605 OrfB family transposase (314 aa)
              0.488
RSAG_02968
No annotation available (61 aa)
              0.488
RSAG_02967
Uncharacterized protein (135 aa)
              0.488
RSAG_03244
Single-stranded DNA-binding protein (153 aa)
       
  0.470
RSAG_02221
Uncharacterized protein (208 aa)
       
    0.469
infB
Translation initiation factor IF-2 ; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (941 aa)
   
        0.447
rbfA
Ribosome-binding factor A ; Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5’-terminal helix region of 16S rRNA (131 aa)
   
        0.447
Your Current Organism:
Ruminococcus sp. 5139BFAA
NCBI taxonomy Id: 457412
Other names: R. sp. 5_1_39BFAA, Ruminococcus 5_1_39BFAA, Ruminococcus sp. 5139BFAA, Ruminococcus sp. 5_1_39BFAA
Server load: low (11%) [HD]